JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDK5RAP3_chr17_47966113_47986781	0/0	c0017	1521	1	0	0	1	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0018	1521	1	0	1	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5_chr7_151048815_151062897	1/0	c0001	879	415	96	70	186	18	44	copy fasta	CDK5	chr7	151048815	151062897
CDK5_chr7_151048815_151062897	0/1	c0002	879	1	0	0	0	0	0	copy fasta	CDK5	chr7	151048815	151062897
CDK6_chr7_92599921_92841573	1/1	c0001	981	123	62	14	32	0	13	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	c0002	981	1	0	0	0	0	1	copy fasta	CDK6	chr7	92599921	92841573
CDK7_chr5_69229886_69282430	0/1	c0001	1041	235	74	45	84	3	28	copy fasta	CDK7	chr5	69229886	69282430
CDK7_chr5_69229886_69282430	0/0	c0002	1041	137	16	27	79	3	12	copy fasta	CDK7	chr5	69229886	69282430
CDK7_chr5_69229886_69282430	0/0	c0003	1041	1	0	0	1	0	0	copy fasta	CDK7	chr5	69229886	69282430
CDK7_chr5_69229886_69282430	0/0	c0004	1041	1	0	0	1	0	0	copy fasta	CDK7	chr5	69229886	69282430
CDK7_chr5_69229886_69282430	0/0	c0005	1041	1	0	0	1	0	0	copy fasta	CDK7	chr5	69229886	69282430
CDK8_chr13_26249129_26410238	1/1	c0001	1395	325	90	58	128	14	33	copy fasta	CDK8	chr13	26249129	26410238
CDK8_chr13_26249129_26410238	0/0	c0002	1395	3	2	0	0	0	1	copy fasta	CDK8	chr13	26249129	26410238
CDK9_chr9_127781034_127795792	1/1	c0001	1119	402	87	76	182	12	43	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	c0002	1119	5	5	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	c0003	1119	1	0	1	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	c0004	1119	1	1	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	c0005	1119	1	1	0	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	c0006	1119	1	0	1	0	0	0	copy fasta	CDK9	chr9	127781034	127795792
CDK9_chr9_127781034_127795792	0/0	c0007	1119	1	0	0	0	0	1	copy fasta	CDK9	chr9	127781034	127795792
CDKAL1_chr6_20529457_21237404	0/0	c0001	1740	74	27	16	22	5	4	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	1/1	c0002	1740	55	8	12	22	6	5	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0003	1740	16	2	2	6	1	5	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0004	1740	10	9	1	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0005	1740	8	4	3	0	1	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0006	1740	8	3	2	0	1	2	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0007	1740	7	3	0	3	0	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0008	1740	4	4	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0009	1740	3	3	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0010	1740	3	0	1	2	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0011	1740	2	1	1	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0012	1740	2	2	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0013	1740	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0014	1740	1	0	0	0	0	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0015	1740	1	0	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	c0016	1740	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKL1_chr14_50321265_50401881	0/1	c0001	1074	178	51	41	62	7	16	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	1/0	c0002	1074	115	25	26	36	8	19	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	c0003	1074	5	1	3	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	c0004	1074	3	3	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	c0005	1074	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	c0006	1074	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	c0007	1054	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	c0008	1074	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL2_chr4_75571496_75635528	1/1	c0001	1713	301	86	66	91	16	40	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	c0002	1713	3	0	0	3	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	c0003	1713	2	2	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL3_chr5_134293424_134372171	1/1	c0001	1779	201	73	49	49	11	17	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	c0002	1779	4	3	1	0	0	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	c0003	1779	1	0	1	0	0	0	copy fasta	CDKL3	chr5	134293424	134372171