JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDKL3_chr5_134293424_134372171	0/0	c0004	1779	1	0	0	0	1	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	c0005	1779	1	0	0	0	0	1	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	c0006	1779	1	0	1	0	0	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	c0007	1779	1	0	0	1	0	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL4_chr2_39170646_39248970	1/1	c0001	1029	279	81	54	101	9	32	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	c0002	1029	3	3	0	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	c0003	1029	3	3	0	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	c0004	1029	1	0	0	1	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	c0005	1029	1	0	0	0	1	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	c0006	1029	1	0	0	1	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	c0007	1029	1	0	0	1	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	c0008	1029	1	1	0	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL5_chrX_18420608_18645196	1/1	c0001	2883	185	48	28	81	7	19	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	c0002	2883	3	1	2	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	c0003	2884	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	c0004	2882	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	c0005	2883	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	c0006	2883	1	0	0	0	0	1	copy fasta	CDKL5	chrX	18420608	18645196
CDKN1A_chr6_36673714_36692332	1/1	c0001	495	291	61	62	114	14	38	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0002	495	153	30	19	95	2	7	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0003	495	2	0	0	2	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0004	495	2	0	0	1	0	1	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0005	495	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0006	495	1	0	0	1	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0007	495	1	0	0	1	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0008	495	1	0	1	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0009	495	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	c0010	495	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1B_chr12_12712368_12727369	1/1	c0001	597	302	17	58	186	12	27	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0002	597	114	72	14	12	4	12	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0003	597	14	0	0	11	0	3	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0004	597	5	0	0	5	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0005	597	3	3	0	0	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0006	597	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0007	597	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0008	597	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	c0009	597	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1C_chr11_2878218_2890775	0/1	c0001	918	234	60	29	106	8	30	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0002	918	103	30	20	37	8	8	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0003	906	46	2	21	18	2	3	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0004	918	7	0	0	7	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0005	918	6	5	1	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0006	912	3	0	3	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0007	894	3	0	2	0	0	1	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0008	906	2	0	0	2	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0009	906	2	0	1	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0010	918	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0011	918	1	0	1	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0012	906	1	0	1	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0013	918	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775