JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDKN1C_chr11_2878218_2890775	0/0	c0014	918	1	1	0	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0015	900	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0016	918	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0017	882	1	1	0	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0018	918	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0019	900	1	0	1	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	c0020	918	1	1	0	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN2AIPNL_chr5_134397065_134416881	1/1	c0001	351	367	84	57	167	14	43	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	c0002	351	11	1	5	0	4	1	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	c0003	351	1	1	0	0	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	c0004	351	1	0	0	1	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIP_chr4_183439636_183454064	1/0	c0001	1743	252	76	46	102	4	23	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/1	c0002	1740	142	14	30	62	10	25	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0003	1743	62	0	4	56	0	2	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0004	1743	3	0	1	2	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0005	1743	3	3	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0006	1743	1	0	0	1	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0007	1740	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0008	1743	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0009	1743	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0010	1743	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0011	1743	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0012	1740	1	0	0	1	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	c0013	1743	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2A_chr9_21962752_21979857	1/1	c0001	471	409	91	73	181	14	48	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	c0002	471	2	2	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	c0003	471	1	1	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	c0004	471	1	0	0	1	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	c0005	471	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	c0006	471	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	c0007	471	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21999392	1/1	c0001	399	402	94	76	164	16	50	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	c0002	399	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	c0003	399	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2B_chr9_21997903_22014305	1/1	c0001	417	411	96	75	174	18	46	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	c0002	417	3	2	1	0	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	c0003	417	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	c0004	417	1	0	0	1	0	0	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2C_chr1_50965245_50979634	0/0	c0001	507	317	92	67	113	12	33	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	c0002	507	17	0	3	11	2	1	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	c0003	507	1	1	0	0	0	0	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	c0004	507	1	1	0	0	0	0	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2D_chr19_10561460_10573979	0/1	c0001	501	398	85	66	188	15	43	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	1/0	c0002	501	11	0	6	0	1	3	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	c0003	501	1	1	0	0	0	0	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN3_chr14_54392007_54425218	1/1	c0001	639	417	98	69	190	16	42	copy fasta	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	c0002	639	1	0	0	1	0	0	copy fasta	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	c0003	639	1	0	0	1	0	0	copy fasta	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	c0004	639	1	0	1	0	0	0	copy fasta	CDKN3	chr14	54392007	54425218
CDNF_chr10_14814245_14843037	1/1	c0001	564	407	96	67	188	13	41	copy fasta	CDNF	chr10	14814245	14843037