JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDNF_chr10_14814245_14843037	0/0	c0002	564	9	0	5	0	1	3	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	c0003	564	2	0	2	0	0	0	copy fasta	CDNF	chr10	14814245	14843037
CDO1_chr5_115799733_115821659	1/1	c0001	603	348	70	76	144	14	42	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	c0002	603	22	22	0	0	0	0	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	c0003	603	1	1	0	0	0	0	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	c0004	635	1	1	0	0	0	0	copy fasta	CDO1	chr5	115799733	115821659
CDON_chr11_125951821_126067866	0/0	c0001	3795	59	1	11	41	2	4	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/1	c0002	3795	48	3	13	23	2	6	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0003	3795	23	6	4	9	0	4	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0004	3795	17	0	1	12	1	3	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0005	3795	14	2	5	4	0	3	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0006	3795	11	0	5	4	0	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0007	3795	10	2	3	0	1	4	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0008	3795	9	7	2	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0009	3795	9	2	4	3	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0010	3795	8	4	3	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	1/0	c0011	3795	8	0	3	0	2	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0012	3795	6	2	1	1	0	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0013	3795	6	3	2	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0014	3795	5	5	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0015	3795	5	1	1	3	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0016	3795	5	4	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0017	3795	4	1	1	2	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0018	3795	4	3	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0019	3795	4	4	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0020	3795	4	1	0	0	0	3	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0021	3795	4	0	2	2	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0022	3795	3	0	2	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0023	3795	3	0	0	3	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0024	3795	3	0	0	3	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0025	3795	3	3	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0026	3795	2	0	1	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0027	3795	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0028	3795	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0029	3795	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0030	3795	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0031	3795	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0032	3795	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0033	3795	2	1	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0034	3795	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0035	3795	2	0	0	1	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0036	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0037	3795	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0038	3795	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0039	3795	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0040	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0041	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0042	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0043	3795	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0044	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866