JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDON_chr11_125951821_126067866	0/0	c0045	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0046	3795	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0047	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0048	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0049	3795	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0050	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0051	3795	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0052	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0053	3795	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0054	3795	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0055	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0056	3795	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0057	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0058	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0059	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0060	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0061	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0062	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0063	3795	1	0	0	0	1	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0064	3795	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0065	3795	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0066	3795	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0067	3795	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0068	3795	1	0	0	0	1	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0069	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0070	3795	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0071	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0072	3795	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0073	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	c0074	3795	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDPF1_chr22_46239013_46255293	1/0	c0001	372	176	19	48	67	10	31	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	c0002	372	51	37	10	0	1	3	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	c0003	372	31	24	3	0	0	4	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/1	c0004	372	19	16	1	0	1	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	c0005	372	2	2	0	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	c0006	372	1	0	0	1	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDR2L_chr17_74982632_75010800	1/0	c0001	1398	194	27	31	106	7	22	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/1	c0002	1398	88	10	24	32	4	17	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	c0003	1398	47	39	7	0	1	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	c0004	1398	21	17	3	0	0	1	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	c0005	1398	1	1	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	c0006	1398	1	0	1	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2_chr16_22340936_22379619	1/1	c0001	1365	297	79	52	110	14	40	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	c0002	1365	6	6	0	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	c0003	1365	4	4	0	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	c0004	1365	2	0	0	0	0	2	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	c0005	1365	1	1	0	0	0	0	copy fasta	CDR2	chr16	22340936	22379619
CDRT15L2_chr17_20574724_20585911	1/1	c0001	846	368	72	75	162	14	43	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	c0002	846	12	0	0	11	0	1	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	c0003	846	11	11	0	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911