JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDRT15L2_chr17_20574724_20585911	0/0	c0004	846	2	2	0	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	c0005	846	1	1	0	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	c0006	846	1	0	1	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	c0007	846	1	0	0	1	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15_chr17_14230673_14241862	0/1	c0001	567	338	85	45	166	12	29	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0002	567	64	4	12	35	4	9	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0003	567	23	0	11	7	0	5	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0004	567	20	1	8	10	0	1	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	1/0	c0005	567	5	3	1	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0006	567	4	0	0	4	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0007	567	4	3	1	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0008	567	2	0	0	2	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0009	567	1	1	0	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	c0010	567	1	1	0	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT4_chr17_15431015_15472621	1/1	c0001	459	230	49	52	90	15	22	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0002	459	159	23	23	92	1	20	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0003	459	16	2	4	10	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0004	456	15	14	1	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0005	459	4	2	2	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0006	459	3	3	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0007	459	1	1	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0008	459	1	1	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	c0009	459	1	1	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDS1_chr4_84578127_84656334	1/1	c0001	1386	370	83	64	170	11	40	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	c0002	1386	10	3	2	0	1	4	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	c0003	1386	1	0	0	1	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	c0004	1386	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	c0005	1386	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	c0006	1386	1	0	0	1	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS2_chr20_5122008_5202887	1/1	c0001	1338	302	90	52	107	13	38	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	c0002	1338	35	5	5	22	1	2	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	c0003	1338	7	0	3	4	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	c0004	1338	3	3	0	0	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	c0005	1338	1	0	0	1	0	0	copy fasta	CDS2	chr20	5122008	5202887
CDSN_chr6_31110087_31125446	0/0	c0001	1590	121	32	26	50	7	6	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0002	1590	68	8	21	26	4	9	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	1/0	c0003	1590	64	5	19	34	2	3	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/1	c0004	1590	61	15	2	34	1	8	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0005	1587	27	7	7	6	3	4	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0006	1587	25	0	0	20	0	5	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0007	1587	25	11	1	13	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0008	1590	14	11	2	0	0	1	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0009	1590	13	0	0	13	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0010	1587	11	0	1	10	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0011	1590	4	0	0	0	0	4	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0012	1590	4	0	1	1	1	1	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0013	1587	3	0	0	0	0	3	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0014	1587	2	0	0	0	0	2	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0015	1590	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0016	1590	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446