JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDSN_chr6_31110087_31125446	0/0	c0017	1590	1	0	0	1	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	c0018	1587	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDT1_chr16_88798789_88814258	0/0	c0001	1641	138	9	20	93	6	10	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0002	1641	103	22	26	32	7	16	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0003	1641	61	16	12	30	0	3	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0004	1641	52	1	16	28	4	3	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0005	1641	16	14	2	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0006	1641	10	9	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0007	1641	7	0	2	0	1	4	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0008	1641	7	0	0	7	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0009	1641	5	0	0	5	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0010	1641	5	5	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0011	1641	4	4	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0012	1641	4	4	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0013	1641	3	0	0	2	0	1	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0014	1641	3	0	0	0	0	3	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0015	1641	2	1	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0016	1641	2	0	1	0	0	1	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0017	1641	2	2	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0018	1641	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0019	1641	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0020	1641	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0021	1641	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0022	1641	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0023	1641	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/1	c0024	1641	1	0	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0025	1641	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0026	1641	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0027	1641	1	0	0	0	0	1	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0028	1641	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0029	1641	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	1/0	c0030	1641	1	0	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0031	1641	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0032	1641	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0033	1641	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0034	1641	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0035	1641	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0036	1641	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	c0037	1641	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDV3_chr3_133568686_133595261	1/1	c0001	777	376	85	81	150	18	40	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	c0002	777	8	7	1	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	c0003	777	1	0	0	1	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	c0004	777	1	0	0	1	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDX1_chr5_150161778_150189558	0/1	c0001	798	236	74	31	95	8	27	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	1/0	c0002	798	170	24	44	78	10	13	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	c0003	798	4	0	0	4	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	c0004	798	4	0	0	0	0	4	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	c0005	798	2	0	1	0	0	1	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	c0006	798	1	0	0	0	0	1	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	c0007	798	1	0	0	1	0	0	copy fasta	CDX1	chr5	150161778	150189558