Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTG2_chr2_73888008_73924865	0/1	c0001	1131	210	38	45	88	8	30	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	1/0	c0002	1131	195	49	21	104	6	14	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	c0003	1131	9	8	1	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	c0004	1131	1	0	1	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	c0005	1131	1	1	0	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTL10_chr20_33661943_33673525	1/1	c0001	738	363	96	66	141	16	42	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	c0002	738	2	2	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	c0003	738	1	0	0	1	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	c0004	738	1	1	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	c0005	738	1	1	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL6A_chr3_179557926_179593407	0/0	c0001	1290	270	51	44	143	10	22	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	1/1	c0002	1290	103	38	25	23	1	14	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	c0003	1290	2	0	0	2	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	c0004	1290	1	0	1	0	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	c0005	1290	1	0	0	0	1	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	c0006	1290	1	0	1	0	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	c0007	1290	1	0	1	0	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	c0008	1290	1	1	0	0	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6B_chr7_100638097_100661448	1/1	c0001	1281	348	87	65	139	12	43	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	c0002	1281	6	0	0	5	0	1	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	c0003	1281	2	0	0	2	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	c0004	1281	1	0	1	0	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	c0005	1281	1	0	0	1	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	c0006	1281	1	1	0	0	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	c0007	1281	1	0	0	1	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL7A_chr9_108857266_108868756	1/1	c0001	1308	433	78	79	215	18	41	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0002	1308	19	2	1	9	0	7	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0003	1308	16	14	2	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0004	1308	3	3	0	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0005	1308	3	0	0	3	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0006	1308	1	0	0	1	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0007	1308	1	1	0	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0008	1308	1	0	1	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0009	1308	1	0	0	1	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0010	1308	1	1	0	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0011	1308	1	0	1	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0012	1308	1	1	0	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	c0013	1308	1	0	0	1	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7B_chr9_108849588_108860986	1/0	c0001	1248	275	49	59	131	9	26	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0002	1248	77	14	8	49	2	4	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/1	c0003	1248	51	0	6	36	2	6	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0004	1248	20	19	1	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0005	1248	19	4	9	0	3	3	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0006	1248	10	2	1	0	0	7	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0007	1248	8	8	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0008	1248	2	0	0	0	2	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0009	1248	1	1	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0010	1248	1	1	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0011	1248	1	0	1	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0012	1248	1	1	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986