JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDYL_chr6_4771404_4960544	0/0	c0009	1635	1	1	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0010	1635	1	1	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0011	1635	1	0	1	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CDYL_chr6_4771404_4960544	0/0	c0012	1635	1	1	0	0	0	0	copy fasta	CDYL	chr6	4771404	4960544
CEACAM16_chr19_44694151_44715718	0/1	c0001	1278	320	65	64	140	15	35	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0002	1278	52	26	14	9	1	2	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	1/0	c0003	1278	50	2	3	40	1	3	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0004	1278	4	4	0	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0005	1278	3	0	0	0	0	3	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0006	1278	2	0	2	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0007	1278	2	0	0	2	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0008	1278	2	2	0	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0009	1278	2	0	0	2	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0010	1278	2	0	0	2	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0011	1278	2	0	2	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0012	1278	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0013	1278	1	0	1	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0014	1278	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0015	1278	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0016	1278	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0017	1278	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0018	1278	1	0	0	0	1	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0019	1278	1	0	0	0	0	1	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	c0020	1278	1	1	0	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM18_chr19_51473539_51496301	0/0	c0001	1155	216	66	43	75	7	25	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0002	1155	79	0	6	70	0	3	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	1/0	c0003	1155	38	2	11	15	5	4	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0004	1155	25	0	5	12	4	4	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0005	1155	10	4	3	0	2	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0006	1155	8	1	4	1	0	2	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0007	1155	8	8	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0008	1155	7	0	0	7	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0009	1155	6	0	5	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0010	1155	4	3	0	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0011	1155	4	4	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0012	1155	4	0	0	4	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0013	1155	3	0	0	0	0	3	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/1	c0014	1155	2	0	1	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0015	1155	1	0	1	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0016	1155	1	0	0	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0017	1155	1	1	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0018	1155	1	1	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0019	1155	1	0	0	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	c0020	1155	1	0	1	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM19_chr19_44666482_44689355	1/1	c0001	900	352	77	57	155	13	48	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	c0002	900	18	13	3	0	1	1	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	c0003	900	12	0	9	0	2	1	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	c0004	900	4	4	0	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	c0005	900	2	0	2	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	c0006	900	1	0	0	1	0	0	copy fasta	CEACAM19	chr19	44666482	44689355