JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEACAM19_chr19_44666482_44689355	0/0	c0007	900	1	0	1	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM1_chr19_42502306_42533481	1/1	c0001	1581	183	43	47	48	11	32	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	c0002	1581	66	8	23	30	1	4	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	c0003	1581	38	34	4	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	c0004	1581	1	1	0	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	c0005	1581	1	0	0	1	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	c0006	1581	1	0	0	1	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM20_chr19_44501159_44534675	0/0	c0001	1791	58	15	13	26	1	3	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0002	1791	56	1	13	22	2	18	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0003	1791	47	1	3	39	2	2	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0004	1791	45	0	6	35	0	4	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0005	1791	44	6	13	20	1	4	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0006	1791	23	3	10	0	6	4	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/1	c0007	1791	22	2	4	13	1	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0008	1791	20	1	3	14	1	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0009	1791	12	5	0	7	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0010	1791	11	10	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0011	1791	7	2	0	4	1	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0012	1791	7	6	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0013	1791	6	0	0	6	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0014	1791	5	4	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0015	1791	5	0	0	5	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0016	1790	5	0	0	5	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0017	1791	5	5	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0018	1791	5	5	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0019	1791	4	4	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0020	1791	4	2	0	0	0	2	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0021	1791	4	4	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0022	1791	4	4	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0023	1791	3	0	3	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0024	1791	3	3	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0025	1791	3	1	1	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0026	1790	3	0	0	3	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0027	1791	2	0	1	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0028	1791	2	1	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0029	1791	2	2	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0030	1791	2	2	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0031	1791	2	1	0	0	1	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0032	1791	1	0	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0033	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0034	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0035	1791	1	0	0	0	0	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0036	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0037	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0038	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0039	1791	1	0	0	0	0	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0040	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	1/0	c0041	1791	1	0	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0042	1791	1	0	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0043	1791	1	0	0	0	0	1	copy fasta	CEACAM20	chr19	44501159	44534675