JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEACAM20_chr19_44501159_44534675	0/0	c0044	1791	1	0	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0045	1791	1	0	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0046	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0047	1791	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	c0048	1791	1	0	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM21_chr19_41571166_41591844	0/1	c0001	882	175	5	39	89	12	29	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0002	885	85	2	2	74	0	7	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0003	882	84	51	13	9	4	7	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0004	882	23	21	2	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0005	882	10	10	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0006	885	4	0	0	4	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0007	882	2	2	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0008	882	1	0	0	1	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0009	882	1	0	0	0	0	1	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0010	882	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0011	882	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0012	882	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0013	885	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0014	885	1	0	0	1	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0015	882	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0016	882	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	c0017	882	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM3_chr19_41791587_41816554	1/0	c0001	759	309	50	57	153	15	33	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/1	c0002	759	75	2	17	43	1	11	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	c0003	759	12	12	0	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	c0004	759	10	9	1	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	c0005	759	8	7	1	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	c0006	759	2	2	0	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM4_chr19_41614015_41632074	0/0	c0001	735	151	5	5	127	1	13	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/1	c0002	735	132	40	26	39	10	16	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	c0003	735	105	21	33	33	7	11	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	c0004	735	43	33	7	0	0	3	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	c0005	735	2	0	0	0	0	2	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	c0006	735	1	0	1	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	c0007	735	1	0	0	0	0	1	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	c0008	735	1	0	0	1	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	c0009	735	1	1	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM5_chr19_41703626_41735433	1/1	c0001	2109	236	35	47	115	8	29	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0002	2109	43	0	12	22	5	4	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0003	2109	15	6	5	0	2	2	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0004	2109	13	13	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0005	2109	12	0	7	0	1	4	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0006	2109	10	9	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0007	2109	6	5	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0008	2109	5	5	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0009	2109	4	4	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0010	2109	3	3	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0011	2109	3	0	1	0	2	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0012	2109	3	0	0	3	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0013	2109	2	0	0	2	0	0	copy fasta	CEACAM5	chr19	41703626	41735433