JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEACAM5_chr19_41703626_41735433	0/0	c0014	2109	2	1	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0015	2109	2	0	0	2	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0016	2109	2	2	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0017	2109	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0018	2109	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0019	2109	1	0	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0020	2109	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0021	2109	1	0	0	0	0	1	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0022	2109	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0023	2109	1	0	0	0	0	1	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0024	2109	1	0	0	0	0	1	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0025	2109	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0026	2109	1	0	0	1	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0027	2109	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0028	2109	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	c0029	2109	1	0	0	1	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM6_chr19_41750530_41777211	1/0	c0001	1035	184	39	31	89	3	21	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0002	1035	113	8	21	61	8	15	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/1	c0003	1035	54	2	18	27	2	4	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0004	1035	43	7	7	27	0	2	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0005	1035	9	9	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0006	1035	5	4	1	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0007	1035	3	3	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0008	1035	3	3	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0009	1035	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0010	1035	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0011	1035	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0012	1035	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0013	1035	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0014	1035	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0015	1035	1	0	0	0	1	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0016	1035	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0017	1035	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0018	1035	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0019	1035	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	c0020	1035	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM7_chr19_41668303_41693270	1/0	c0001	798	221	59	31	98	5	27	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/1	c0002	798	162	14	40	79	11	17	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0003	798	9	0	7	0	0	2	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0004	798	6	6	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0005	798	5	5	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0006	798	3	3	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0007	798	2	0	0	2	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0008	798	1	0	0	1	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0009	798	1	0	0	1	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0010	798	1	1	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	c0011	798	1	0	0	1	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM8_chr19_42575243_42599924	1/1	c0001	1050	230	55	54	70	16	33	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0002	1050	51	7	21	15	1	7	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0003	1050	15	15	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924