JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEACAM8_chr19_42575243_42599924	0/0	c0004	1050	8	7	1	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0005	1050	3	1	0	0	1	1	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0006	1050	1	0	1	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0007	1050	1	0	1	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0008	1050	1	0	0	0	0	1	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0009	1050	1	1	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0011	1050	1	1	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	c0012	1050	1	0	0	1	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEBPA_chr19_33294934_33307534	1/0	c0001	1077	348	66	57	167	11	46	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0002	1083	44	7	5	30	2	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/1	c0003	1077	36	21	4	3	5	2	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0004	1077	12	0	11	0	0	1	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0005	1089	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0006	1083	1	0	1	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0007	1077	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0009	1077	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0010	1077	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0011	1077	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0012	1077	1	0	0	0	0	1	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0013	1077	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	c0014	1077	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPB_chr20_50185830_50197668	1/1	c0001	1038	244	76	51	85	7	23	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	c0002	1038	134	15	29	62	8	20	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	c0003	1038	1	0	0	1	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	c0004	1038	1	0	0	1	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	c0005	1038	1	0	0	0	0	1	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	c0006	1038	1	0	0	0	1	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	c0007	1038	1	0	0	1	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	c0008	1038	1	1	0	0	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPD_chr8_47731913_47743164	1/1	c0001	810	278	78	52	100	14	32	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	c0002	810	20	5	0	13	0	2	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	c0003	810	5	0	4	0	0	1	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	c0004	810	5	4	1	0	0	0	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	c0005	810	4	0	1	3	0	0	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	c0006	810	2	2	0	0	0	0	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	c0007	810	1	0	0	0	0	1	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	c0008	810	1	1	0	0	0	0	copy fasta	CEBPD	chr8	47731913	47743164
CEBPE_chr14_23112306_23124255	1/1	c0001	846	454	94	77	220	13	48	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	c0002	846	1	1	0	0	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	c0003	846	1	0	0	0	1	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	c0004	846	1	0	1	0	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	c0005	846	1	1	0	0	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPG_chr19_33368709_33387686	1/1	c0001	453	434	95	72	207	16	42	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	c0002	453	1	0	0	1	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPG_chr19_33368709_33387686	0/0	c0003	453	1	1	0	0	0	0	copy fasta	CEBPG	chr19	33368709	33387686
CEBPZOS_chr2_37191496_37209743	1/1	c0001	243	466	94	76	234	16	44	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZ_chr2_37196612_37236596	0/0	c0001	3165	141	38	26	53	5	19	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/1	c0002	3165	138	12	24	87	6	8	copy fasta	CEBPZ	chr2	37196612	37236596