JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEBPZ_chr2_37196612_37236596	0/0	c0003	3165	85	1	13	68	0	3	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0004	3165	30	28	2	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	1/0	c0005	3165	12	0	5	0	1	5	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0006	3165	6	6	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0007	3162	6	0	2	0	2	2	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0008	3165	4	0	2	0	0	2	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0009	3165	3	2	1	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0010	3165	2	2	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0011	3165	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0012	3165	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0013	3165	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0014	3165	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0015	3165	1	0	1	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0016	3165	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0017	3165	1	0	0	1	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0018	3165	1	0	0	0	0	1	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0019	3165	1	0	0	1	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0020	3165	1	0	0	1	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	c0021	3165	1	0	0	1	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CECR2_chr22_17364460_17563151	1/1	c0001	4395	202	60	45	62	8	25	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0002	4395	73	11	14	45	3	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0003	4395	11	2	5	3	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0004	4395	10	10	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0005	4395	2	0	0	2	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0006	4395	2	0	0	2	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0007	4395	2	0	0	0	0	2	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0008	4395	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0009	4395	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0010	4395	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0011	4395	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0012	4395	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0013	4395	1	0	0	0	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0014	4395	1	0	0	0	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0015	4395	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0016	4395	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0017	4395	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0018	4395	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0019	4395	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0020	4395	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0021	4395	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0022	4395	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0023	4395	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0024	4395	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0025	4395	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0026	4395	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	c0027	4395	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CELA1_chr12_51323442_51351679	1/1	c0001	777	189	48	34	76	6	23	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0002	776	76	8	17	49	0	2	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0003	776	47	14	2	31	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0004	777	42	8	16	4	5	9	copy fasta	CELA1	chr12	51323442	51351679