JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CELA1_chr12_51323442_51351679	0/0	c0005	776	35	6	3	21	3	2	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0006	776	6	5	1	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0007	777	3	0	0	0	0	3	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0008	777	2	2	0	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0009	777	1	0	1	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0010	776	1	0	0	1	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0011	777	1	0	1	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0012	777	1	0	1	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0013	777	1	1	0	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	c0014	777	1	0	0	0	0	1	copy fasta	CELA1	chr12	51323442	51351679
CELA2A_chr1_15451732_15477091	0/0	c0000	0	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	1/0	c0001	810	204	15	36	122	11	19	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/1	c0002	810	117	38	21	40	5	12	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0003	810	45	15	10	14	1	5	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0004	810	27	11	8	4	1	3	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0005	810	14	11	2	0	0	1	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0006	810	8	0	8	0	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0007	810	4	0	0	2	0	2	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0008	810	2	0	0	2	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0009	810	1	1	0	0	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0010	639	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0011	810	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0012	810	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0013	810	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0014	810	1	1	0	0	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0015	810	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	c0016	810	1	0	1	0	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2B_chr1_15471104_15496395	0/1	c0001	810	225	45	51	80	11	37	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0002	810	151	32	26	85	3	5	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0003	810	7	6	0	1	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0004	810	6	0	3	3	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	1/0	c0005	810	6	5	0	0	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0006	810	4	0	0	4	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0007	810	4	3	1	0	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0008	810	3	0	0	3	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0009	810	2	0	1	1	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0010	810	2	0	0	0	2	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0011	810	1	0	0	1	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0012	810	1	0	0	1	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0013	810	1	0	0	1	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	c0014	810	1	1	0	0	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA3A_chr1_21996657_22017542	0/0	c0001	813	97	0	27	56	2	12	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0002	813	91	18	11	55	3	4	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/1	c0003	813	90	15	25	13	13	23	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0004	813	83	24	8	46	0	5	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0005	813	22	11	2	9	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0006	813	14	11	1	2	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0007	813	6	6	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0008	813	3	1	2	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0009	813	2	2	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542