JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CELA3A_chr1_21996657_22017542	0/0	c0010	813	2	0	0	2	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0011	813	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0012	813	1	0	0	1	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0013	813	1	0	0	0	0	1	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0014	813	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0015	813	1	0	0	1	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0016	813	1	0	0	0	0	1	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0017	813	1	0	0	1	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0018	813	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	c0019	813	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3B_chr1_21972022_21994354	0/1	c0001	813	259	47	68	92	13	38	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	1/0	c0002	813	77	20	2	50	1	3	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0003	813	53	13	1	38	1	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0004	813	9	0	0	6	0	3	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0005	742	5	4	1	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0006	813	5	0	0	5	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0007	813	4	4	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0008	813	4	1	3	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0009	813	3	0	2	0	0	1	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0010	813	3	3	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0011	813	3	1	2	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0012	813	2	0	1	0	1	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0013	813	2	2	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0014	813	2	0	0	2	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0015	813	2	0	1	0	0	1	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0016	813	2	0	0	1	0	1	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0017	813	1	1	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0018	795	1	0	0	0	1	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0019	796	1	0	0	0	1	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0020	813	1	0	0	1	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0021	813	1	0	0	1	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0022	813	1	1	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0023	832	1	1	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0024	813	1	0	0	0	0	1	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	c0025	813	1	0	1	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELF1_chr11_47460937_47558132	1/1	c0001	1545	335	81	55	148	10	39	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	c0002	1545	2	1	1	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	c0003	1545	2	2	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	c0004	1545	1	0	0	0	0	1	copy fasta	CELF1	chr11	47460937	47558132
CELF2_chr10_11012872_11341675	0/0	c0001	1566	73	31	9	17	4	12	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0002	1566	63	19	22	10	5	7	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	1/1	c0003	1566	25	8	11	1	1	2	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0004	1566	22	14	2	2	0	4	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0005	1566	4	0	0	4	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0006	1566	2	2	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0007	1566	1	0	0	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0008	1566	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0009	1566	1	0	0	0	0	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0010	1566	1	0	0	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	c0011	1566	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675