Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTL7B_chr9_108849588_108860986	0/0	c0013	1248	1	0	0	1	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0014	1248	1	0	1	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0015	1248	1	1	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	c0016	1248	1	0	0	1	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL8_chr1_17750333_17832063	1/1	c0001	1101	145	46	29	45	8	15	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0002	1101	67	6	13	40	4	4	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0003	1101	66	11	10	37	0	8	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0004	1101	39	2	5	29	0	3	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0005	1101	15	13	2	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0006	1101	7	0	0	4	2	1	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0007	1101	6	0	0	6	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0008	1101	5	5	0	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0009	1101	4	1	2	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0010	1101	3	0	0	3	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0011	1101	2	2	0	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0012	1101	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0013	1101	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0014	1101	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0015	1101	1	0	0	0	0	1	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0016	1101	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0017	1101	1	0	1	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	c0018	1101	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL9_chr19_8692400_8703795	1/1	c0001	1251	203	49	38	79	9	26	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0002	1251	73	21	11	30	1	10	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0003	1251	64	11	17	22	5	9	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0004	1251	2	0	0	2	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0005	1251	2	0	2	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0006	1251	2	0	2	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0007	1251	1	0	1	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0008	1251	1	1	0	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0009	1251	1	1	0	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0010	1251	1	0	1	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0011	1251	1	0	0	1	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0012	1251	1	0	0	1	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0013	1251	1	0	0	1	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0014	1251	1	0	0	0	0	1	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0015	1251	1	1	0	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	c0016	1251	1	0	0	0	1	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTMAP_chr19_40735861_40755477	0/0	c0001	1056	232	68	52	79	11	22	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	1/1	c0002	1056	91	12	19	45	3	10	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0003	1056	73	4	1	62	2	4	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0004	1056	12	10	2	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0005	1056	10	0	0	10	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0006	1056	1	0	1	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0009	1056	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0010	1056	1	0	1	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0011	1056	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	c0012	1056	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477