JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CELSR2_chr1_109244539_109280751	0/0	c0053	8772	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0054	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0055	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0056	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0057	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0058	8772	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0059	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0060	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0061	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0062	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0063	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0064	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0065	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0066	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0067	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0068	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0069	8772	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0070	8772	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0071	8772	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	c0072	8772	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR3_chr3_48631463_48667886	1/1	c0001	9939	89	31	18	28	7	3	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0002	9939	43	9	8	21	3	2	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0003	9939	20	20	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0004	9939	4	4	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0005	9939	4	4	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0006	9939	4	0	4	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0007	9939	4	0	0	4	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0008	9939	3	0	0	2	0	1	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0009	9939	3	0	0	3	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0010	9939	2	2	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0011	9939	2	1	1	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0012	9939	2	2	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0013	9939	2	2	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0014	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0015	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0016	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0017	9939	1	0	0	0	0	1	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0018	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0019	9939	1	0	1	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0020	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0021	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0022	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0023	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0024	9939	1	0	0	0	0	1	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0025	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0026	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0027	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0028	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0029	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0030	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886