JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CELSR3_chr3_48631463_48667886	0/0	c0031	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0032	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0033	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0034	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0035	9939	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0036	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	c0037	9939	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CEL_chr9_133056981_133076861	0/0	c0001	2229	33	8	4	18	2	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/1	c0002	2230	30	8	4	14	0	3	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0003	2196	19	6	4	5	3	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0004	2229	14	1	3	9	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0005	2230	11	0	2	8	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0006	2197	8	1	2	3	1	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0007	2231	8	0	3	5	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0008	2231	8	1	4	3	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0009	2230	6	2	2	0	1	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	1/0	c0010	2262	6	0	1	4	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0011	2231	5	2	0	3	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0012	2164	4	0	1	2	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0013	2232	4	2	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0014	1998	3	3	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0015	2232	3	1	1	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0016	2163	3	0	1	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0017	2230	3	1	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0018	2163	2	0	2	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0019	2235	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0020	2264	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0021	2232	2	0	1	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0022	2231	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0023	2230	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0024	2233	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0025	2130	2	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0026	2164	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0027	2165	2	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0028	2232	2	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0029	2230	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0030	2198	2	0	2	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0031	2231	2	0	0	0	0	2	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0032	2097	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0033	2231	2	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0034	2231	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0035	2263	2	0	1	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0036	2197	2	2	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0037	2197	2	0	0	0	0	2	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0038	2163	2	2	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0039	2132	2	0	1	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0040	2131	2	0	1	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0041	2230	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0042	2198	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0043	2168	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861