JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEL_chr9_133056981_133076861	0/0	c0144	2231	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0145	2329	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0146	2329	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0147	22960	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0148	22590	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0149	2297	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0150	2198	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0151	22554	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0152	2231	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0153	2231	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0154	2230	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0155	2265	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0156	2264	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0157	2229	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0158	2233	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0159	2231	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0160	2230	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0161	22620	1	0	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0162	2329	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0163	22651	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0164	2262	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0165	2328	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0166	2163	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0167	2264	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0168	2264	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0169	2264	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0170	2366	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0171	2263	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0172	2264	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0173	2263	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0174	2230	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0175	2229	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0176	2229	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0177	2031	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0178	2164	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0179	2167	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0180	2165	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0181	2231	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0182	2232	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0183	2234	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0184	2232	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0185	2230	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0186	2230	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0187	2197	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0188	2163	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0189	2196	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0190	2203	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0191	2165	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0192	2235	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0193	2234	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861