JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEMIP_chr15_80774370_80956771	0/0	c0013	4086	2	2	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0014	4086	2	2	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0015	4086	2	0	0	2	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0016	4086	2	0	0	2	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	1/0	c0017	4086	2	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0018	4086	2	0	1	0	0	1	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0019	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0020	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0021	4086	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0022	4086	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0023	4086	1	0	0	0	1	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0024	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0025	4086	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0026	4086	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0027	4086	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0028	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0029	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0030	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0031	4086	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0032	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0033	4086	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0034	4086	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	c0035	4086	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMP1_chr16_2525035_2536408	1/1	c0001	744	317	61	68	143	8	35	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	c0002	744	27	27	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	c0003	744	1	1	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	c0004	732	1	0	0	1	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	c0005	744	1	1	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	c0006	744	1	0	0	0	0	1	copy fasta	CEMP1	chr16	2525035	2536408
CENATAC_chr11_118993138_119020793	1/1	c0001	999	219	48	53	92	5	19	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	c0002	999	89	36	17	24	5	7	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	c0003	999	7	7	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	c0004	999	1	1	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	c0005	999	1	1	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	c0006	999	1	1	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CEND1_chr11_782115_795090	1/1	c0001	450	408	97	77	178	14	40	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	c0002	450	2	0	0	2	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	c0003	450	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	c0004	450	1	1	0	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	c0005	450	1	0	1	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	c0006	450	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CENPA_chr2_26781056_26799589	1/1	c0001	423	377	85	74	162	16	38	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	c0002	423	4	4	0	0	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	c0003	423	1	1	0	0	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPB_chr20_3778851_3791740	1/1	c0001	1800	385	83	68	178	18	36	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0002	1800	5	0	5	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0003	1803	5	4	1	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0004	1800	3	3	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0005	1800	3	3	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0006	1800	2	2	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740