Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AASDH_chr4_56333290_56392491	0/0	c0004	3297	53	2	0	43	0	8	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0005	3297	40	4	4	27	3	2	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0006	3297	9	0	0	9	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0007	3294	8	8	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0008	3297	4	4	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0009	3297	3	3	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0010	3297	2	2	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0011	3297	2	0	0	2	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0012	3297	2	0	1	0	0	1	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0013	3297	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0014	3297	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0015	3297	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0016	3297	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0017	3297	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0018	3297	1	0	0	0	0	1	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0019	3297	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0020	3297	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0021	3297	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0022	3297	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0023	3297	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0024	3297	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	c0025	3297	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASS_chr7_122068549_122149249	1/1	c0001	2781	363	78	74	164	10	35	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0002	2781	4	4	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0003	2781	3	3	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0004	2781	3	0	0	3	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0005	2781	2	2	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0006	2781	1	0	0	0	0	1	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0007	2781	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0008	2781	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0009	2781	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0010	2781	1	0	0	0	1	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0011	2781	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0012	2781	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0013	2781	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	c0014	2781	1	0	0	0	1	0	copy fasta	AASS	chr7	122068549	122149249
AATF_chr17_36943954_37061871	0/1	c0001	1683	192	64	35	70	6	16	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0002	1683	31	4	8	10	2	7	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0003	1683	9	9	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0004	1683	5	2	0	2	0	1	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0005	1683	3	3	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0006	1683	1	1	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0007	1683	1	1	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0008	1683	1	0	1	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0009	1683	1	1	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	c0010	1683	1	1	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATK_chr17_81112295_81171221	0/0	c0001	4125	78	10	15	39	5	9	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/1	c0002	4125	70	3	9	45	6	6	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0003	4125	36	1	19	11	1	4	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	1/0	c0004	4125	18	1	2	13	0	1	copy fasta	AATK	chr17	81112295	81171221