Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTMAP_chr19_40735861_40755477	0/0	c0013	1056	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTN1_chr14_68869128_68984302	1/1	c0001	2745	189	67	30	64	8	18	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0002	2745	66	13	23	13	5	12	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0003	2745	5	5	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0004	2745	3	0	1	0	0	2	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0005	2745	3	2	1	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0006	2745	2	0	0	2	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0007	2745	2	1	1	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0008	2745	2	0	1	0	1	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0009	2745	2	2	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0010	2745	1	0	0	0	0	1	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0011	2745	1	0	1	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0012	2745	1	0	0	0	0	1	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0013	2745	1	1	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0014	2745	1	0	1	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0015	2745	1	1	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0016	2745	1	0	1	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0017	2745	1	0	0	1	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0018	2745	1	1	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	c0019	2745	1	1	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN2_chr1_236681499_236769631	0/1	c0001	2685	184	32	36	82	6	27	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0002	2685	64	18	9	28	4	5	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0003	2685	20	7	9	3	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0004	2685	17	16	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0005	2685	9	0	0	9	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0006	2685	6	2	0	3	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0007	2685	5	5	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0008	2685	5	0	0	5	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0009	2685	3	0	0	2	1	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0010	2685	3	1	2	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0011	2685	2	2	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0012	2685	2	2	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0013	2685	2	1	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	1/0	c0014	2685	2	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0015	2685	2	0	2	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0016	2685	1	0	0	0	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0017	2685	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0018	2685	1	0	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0019	2685	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0020	2685	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0021	2685	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0022	2685	1	0	0	0	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0023	2685	1	0	0	0	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0024	2685	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0025	2685	1	0	0	0	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0026	2685	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0027	2685	1	0	0	0	1	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0028	2685	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0029	2685	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0030	2685	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631