JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CENPB_chr20_3778851_3791740	0/0	c0007	1800	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0008	1800	1	0	0	0	0	1	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0009	1800	1	0	0	0	0	1	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0010	1800	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0011	1800	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0012	1800	1	1	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	c0013	1800	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPC_chr4_67463762_67550503	0/1	c0001	2832	208	41	45	93	9	19	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	1/0	c0002	2832	101	29	12	41	5	13	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0003	2832	8	0	4	0	4	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0004	2832	4	4	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0005	2832	3	2	1	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0006	2832	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0007	2832	2	0	0	2	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0008	2832	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0009	2832	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0010	2832	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0011	2832	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0012	2832	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0013	2832	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	c0014	2832	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPE_chr4_103100811_103203343	1/1	c0001	8106	137	25	18	71	5	16	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0002	8106	54	3	11	24	2	14	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0003	8106	48	1	11	31	2	3	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0004	8106	21	21	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0005	8106	8	6	2	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0006	8106	7	0	7	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0007	8106	6	5	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0008	8106	5	4	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0009	8106	4	4	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0010	8106	4	3	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0011	8106	3	3	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0012	8106	2	2	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0013	8106	2	2	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0014	8106	2	2	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0015	8106	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0016	8106	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0017	8106	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0018	8106	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0019	8106	1	0	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0020	8106	1	0	0	1	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0021	8106	1	0	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0022	8106	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0023	8106	1	0	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0024	8106	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0025	8106	1	0	0	0	0	1	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0026	8106	1	0	0	0	1	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0027	8106	1	0	0	1	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0028	8106	1	0	0	1	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0029	8106	1	0	0	1	0	0	copy fasta	CENPE	chr4	103100811	103203343