JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CENPE_chr4_103100811_103203343	0/0	c0030	8106	1	0	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	c0031	8106	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPF_chr1_214598195_214669571	0/0	c0001	9345	73	7	16	39	4	7	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/1	c0002	9345	34	1	8	10	4	10	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0003	9345	26	0	5	17	0	4	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0004	9345	16	15	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0005	9345	15	1	4	9	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0006	9345	8	2	1	4	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0007	9345	8	8	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0008	9345	5	0	0	5	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	1/0	c0009	9345	5	2	0	1	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0010	9345	5	5	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0011	9345	4	0	0	0	0	4	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0012	9345	4	4	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0013	9345	4	4	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0014	9345	4	3	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0015	9345	4	3	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0016	9345	3	0	3	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0017	9345	3	0	0	3	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0018	9345	3	3	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0019	9345	3	3	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0020	9345	3	1	0	0	0	2	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0021	9345	2	0	0	2	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0022	9345	2	0	1	0	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0023	9345	2	0	0	0	0	2	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0024	9345	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0025	9345	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0026	9345	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0027	9345	2	0	1	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0028	9345	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0029	9345	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0030	9345	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0031	9345	1	0	0	0	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0032	9345	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0033	9345	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0034	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0035	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0036	9345	1	0	0	1	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0037	9345	1	0	0	1	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0038	9345	1	0	0	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0039	9345	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0040	9345	1	0	0	0	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0041	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0042	9345	1	0	0	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0043	9345	1	0	0	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0044	9345	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0045	9345	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0046	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0047	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0048	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571