JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CENPF_chr1_214598195_214669571	0/0	c0049	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0050	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0051	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0052	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0053	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0054	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0055	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0056	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0057	9345	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0058	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0059	9345	1	0	0	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0060	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0061	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	c0062	9345	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPH_chr5_69184583_69215357	1/1	c0001	744	384	92	74	162	8	46	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	c0002	744	1	0	1	0	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	c0003	744	1	0	0	1	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	c0004	744	1	0	0	1	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	c0005	744	1	0	1	0	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPI_chrX_101093204_101171126	1/1	c0001	2271	177	32	40	77	8	18	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0002	2271	97	32	16	36	3	10	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0003	2271	2	2	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0004	2271	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0005	2272	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0006	2272	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0007	2271	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0008	2271	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	c0009	2271	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPJ_chr13_24877279_24927861	1/1	c0001	4017	118	32	23	40	6	15	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0002	4017	116	15	23	57	1	20	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0003	4017	78	10	11	50	4	3	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0004	4017	20	0	5	15	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0005	4017	20	0	3	16	0	1	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0006	4017	17	3	8	0	4	2	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0007	4017	11	0	0	11	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0008	4017	10	8	2	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0009	4017	7	7	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0010	4017	7	6	1	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0011	4017	6	5	1	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0012	4017	4	0	0	3	0	1	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0013	4017	3	0	0	3	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0014	4017	3	0	0	3	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0015	4017	3	3	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0016	4017	2	0	0	0	0	2	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0017	4017	2	0	0	2	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0018	4017	1	1	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0019	4017	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0020	4017	1	0	0	0	1	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0021	4017	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0022	4017	1	0	0	0	0	1	copy fasta	CENPJ	chr13	24877279	24927861