JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CENPJ_chr13_24877279_24927861	0/0	c0023	4017	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0024	4017	1	0	0	0	0	1	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0025	4017	1	1	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0026	4017	1	1	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0027	4017	1	0	1	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0028	4017	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0029	4017	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	c0030	4017	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPK_chr5_65512766_65568168	1/1	c0001	810	363	91	76	135	18	41	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	c0002	810	8	0	0	8	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	c0003	810	1	1	0	0	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	c0004	810	1	0	0	0	0	1	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	c0005	810	1	0	0	1	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPL_chr1_173794550_173829883	1/1	c0001	1035	307	50	46	158	10	41	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	c0002	1035	43	39	4	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	c0003	1035	4	0	0	4	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	c0004	1035	1	0	0	1	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	c0005	1035	1	1	0	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	c0006	1035	1	0	0	1	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	c0007	1035	1	0	0	0	0	1	copy fasta	CENPL	chr1	173794550	173829883
CENPM_chr22_41933737_41952152	1/0	c0001	543	163	38	26	69	9	20	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	c0002	543	68	28	22	8	0	10	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/1	c0003	543	18	1	6	7	1	2	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	c0004	543	5	5	0	0	0	0	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	c0005	506	1	0	0	1	0	0	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	c0006	543	1	0	0	0	0	1	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	c0007	543	1	0	0	0	0	1	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	c0008	543	1	0	0	1	0	0	copy fasta	CENPM	chr22	41933737	41952152
CENPN_chr16_81002214_81036485	0/0	c0001	1020	183	44	20	110	1	8	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/1	c0002	1020	175	33	43	68	7	23	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0003	1020	14	0	0	13	0	1	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	1/0	c0004	1020	5	3	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0005	1020	5	0	2	0	1	2	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0006	1020	4	4	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0007	1020	4	0	0	4	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0008	1020	2	0	2	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0009	1020	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0010	1020	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0011	1020	1	0	0	0	1	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0012	1020	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0013	1020	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	c0014	1020	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPO_chr2_24788425_24827376	1/1	c0001	903	303	61	67	124	17	32	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0002	903	69	9	9	45	0	6	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0003	903	2	2	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0004	903	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0005	903	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0006	903	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0007	903	1	0	0	0	1	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0008	903	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376