JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CENPO_chr2_24788425_24827376	0/0	c0009	903	1	0	1	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0010	903	1	0	1	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	c0011	903	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPP_chr9_92320953_92625529	0/0	c0001	867	251	59	46	98	16	32	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	c0002	867	5	4	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	c0003	867	3	3	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	c0004	867	1	0	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPQ_chr6_49458370_49498107	0/1	c0001	807	138	26	30	63	7	11	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	c0002	807	100	38	10	36	6	10	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	1/0	c0003	807	96	18	14	49	1	13	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	c0004	807	18	2	1	12	0	3	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	c0005	807	5	3	2	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	c0006	807	3	0	3	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	c0007	807	1	1	0	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	c0008	807	1	0	0	0	0	1	copy fasta	CENPQ	chr6	49458370	49498107
CENPS_chr1_10425433_10447808	1/1	c0001	417	409	98	77	174	14	44	copy fasta	CENPS	chr1	10425433	10447808
CENPS_chr1_10425433_10447808	0/0	c0002	417	1	0	1	0	0	0	copy fasta	CENPS	chr1	10425433	10447808
CENPT_chr16_67823157_67852693	1/1	c0001	1686	218	74	50	62	3	27	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0002	1686	19	0	1	18	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0003	1686	9	9	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0004	1686	5	0	4	0	1	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0005	1686	5	5	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0006	1686	3	0	0	3	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0007	1686	1	1	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0008	1686	1	0	0	1	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0009	1686	1	1	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0010	1686	1	0	0	0	0	1	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0011	1686	1	0	1	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0012	1686	1	0	0	1	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	c0013	1686	1	0	0	1	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPU_chr4_184689085_184739096	1/1	c0001	1257	158	46	23	64	8	15	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0002	1257	125	4	22	88	3	8	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0003	1257	19	15	4	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0004	1257	18	16	2	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0005	1257	14	1	8	0	0	5	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0006	1257	10	2	6	0	1	1	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0007	1257	4	4	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0008	1257	3	0	1	0	0	2	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0009	1257	2	2	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0010	1257	2	0	0	0	0	2	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0011	1257	1	0	0	0	0	1	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0012	1257	1	1	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	c0013	1257	1	1	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPVL1_chrX_51705512_51717131	0/0	c0001	819	199	49	36	86	6	22	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	c0002	819	27	6	8	8	2	3	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	c0003	819	5	4	1	0	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	c0004	819	2	2	0	0	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	c0005	819	2	1	1	0	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	c0006	821	1	0	0	1	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	c0007	819	1	0	0	0	0	1	copy fasta	CENPVL1	chrX	51705512	51717131