JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CENPVL1_chrX_51705512_51717131	0/0	c0008	820	1	0	0	1	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL2_chrX_51676212_51687831	0/0	c0001	819	197	43	36	94	6	18	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	c0002	819	30	7	10	8	2	3	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	c0003	819	4	4	0	0	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	c0004	819	3	2	1	0	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	c0005	822	1	0	0	0	0	1	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	c0006	819	1	1	0	0	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	c0007	820	1	0	0	1	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL3_chrX_51612020_51623912	0/0	c0001	819	194	48	20	94	6	26	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	1/1	c0002	819	98	21	32	37	2	4	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	c0003	819	3	0	0	3	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	c0004	820	1	0	0	1	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	c0005	819	1	0	0	0	1	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	c0006	818	1	0	0	1	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPV_chr17_16337537_16358469	0/1	c0001	828	209	40	31	107	5	25	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	1/0	c0002	819	131	33	44	31	7	15	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0003	829	6	2	0	4	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0004	873	2	0	0	2	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0005	837	2	0	0	2	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0006	820	1	1	0	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0007	819	1	0	1	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0008	801	1	1	0	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0009	828	1	0	0	1	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0010	828	1	0	0	1	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	c0011	837	1	1	0	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPW_chr6_126335115_126353875	1/1	c0001	267	281	92	49	98	8	32	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	c0002	267	9	2	3	0	2	2	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	c0003	267	2	0	0	2	0	0	copy fasta	CENPW	chr6	126335115	126353875
CENPX_chr17_82013703_82027878	1/1	c0001	246	398	94	76	171	16	39	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	c0002	246	2	0	1	0	0	1	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	c0003	246	1	0	1	0	0	0	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	c0004	246	1	0	0	1	0	0	copy fasta	CENPX	chr17	82013703	82027878
CEP104_chr1_3807086_3862211	0/1	c0001	2778	126	57	26	20	8	14	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0002	2778	113	6	26	60	4	17	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0003	2778	76	6	14	41	1	14	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0004	2778	20	0	0	20	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0005	2778	16	0	10	6	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0006	2778	10	10	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0007	2778	3	3	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0008	2778	2	2	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0009	2778	2	0	0	2	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0010	2778	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0011	2778	1	0	0	0	1	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0012	2778	1	0	1	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0013	2778	1	0	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0014	2778	1	0	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	1/0	c0015	2778	1	0	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0016	2778	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0017	2778	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0018	2778	1	0	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211