JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP104_chr1_3807086_3862211	0/0	c0019	2778	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0020	2778	1	0	1	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0021	2778	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0022	2778	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	c0023	2778	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP112_chr17_65630537_66197133	0/0	c0001	2868	46	22	8	6	3	7	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/1	c0002	2868	39	10	9	6	3	10	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	1/0	c0003	2868	17	9	3	2	0	2	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	c0004	2868	2	2	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	c0005	2868	2	0	0	2	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	c0006	2868	2	2	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	c0007	2868	1	1	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	c0008	2868	1	1	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	c0009	2868	1	1	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	c0010	2868	1	0	0	0	0	1	copy fasta	CEP112	chr17	65630537	66197133
CEP120_chr5_123339892_123428403	1/1	c0001	2961	117	24	20	52	5	14	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0002	2961	82	13	12	47	2	8	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0003	2961	73	13	10	42	1	7	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0004	2961	34	6	8	14	0	6	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0005	2961	33	15	15	0	3	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0006	2961	14	11	3	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0007	2961	6	6	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0008	2961	4	0	0	4	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0009	2961	2	0	0	2	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0010	2961	2	1	1	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0011	2961	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0012	2961	1	0	0	0	0	1	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0013	2961	1	0	0	1	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0014	2961	1	0	0	0	1	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0015	2961	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0016	2961	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0017	2961	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0018	2961	1	0	1	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	c0019	2961	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP126_chr11_101910010_102006062	0/0	c0001	3354	209	53	42	83	11	20	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0002	3354	48	2	9	29	1	7	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0003	3354	40	0	5	29	0	6	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0004	3354	10	6	1	0	0	3	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0005	3354	7	7	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0006	3354	7	6	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0007	3354	2	0	0	1	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0008	3354	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0009	3354	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0010	3354	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0011	3354	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0012	3354	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0013	3354	1	0	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0014	3354	1	0	0	0	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0015	3354	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0016	3354	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062