JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP126_chr11_101910010_102006062	0/0	c0017	3354	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	c0018	3354	1	0	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP128_chr14_80491479_80946738	1/0	c0001	3285	82	32	14	26	1	8	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/1	c0002	3285	35	7	6	9	0	12	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0003	3285	8	0	2	5	0	1	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0004	3285	7	6	1	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0005	3285	6	5	1	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0006	3285	4	0	3	0	1	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0007	3285	3	2	1	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0008	3285	2	2	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0009	3285	2	2	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0010	3285	2	2	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0011	3285	2	0	0	2	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0012	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0013	3285	1	0	0	0	0	1	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0014	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0015	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0016	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0017	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0018	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0019	3285	1	0	0	1	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0020	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0021	3285	1	0	0	1	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	c0022	3285	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP131_chr17_81184596_81227965	0/1	c0001	3243	97	3	14	58	2	19	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0002	3243	49	15	2	26	1	5	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0003	3243	49	16	22	1	6	4	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0004	3243	31	5	4	17	2	3	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0005	3243	11	2	0	9	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0006	3243	10	0	0	10	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0007	3243	9	0	7	2	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0008	3243	8	8	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	1/0	c0009	3243	8	5	2	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0010	3243	6	0	0	5	0	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0011	3243	5	0	2	0	2	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0012	3243	5	0	0	0	3	2	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0013	3243	5	0	0	0	0	5	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0014	3243	4	4	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0015	3243	4	2	2	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0016	3243	4	0	1	3	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0017	3243	4	0	0	4	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0018	3243	4	0	0	4	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0019	3243	4	0	4	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0020	3243	3	3	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0021	3243	3	0	2	0	1	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0022	3243	3	3	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0023	3243	2	2	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0024	3243	2	0	0	2	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0025	3243	2	0	1	0	0	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	c0026	3243	2	2	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965