JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP135_chr4_55943945_56038361	0/0	c0003	3423	11	2	7	1	0	1	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0004	3423	5	0	2	0	2	1	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0005	3423	4	4	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0006	3423	4	4	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0007	3423	3	0	3	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0008	3423	2	1	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0009	3423	2	0	2	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0010	3423	2	0	0	2	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0011	3423	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0012	3423	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0013	3423	1	0	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0014	3423	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0015	3423	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0016	3423	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0017	3423	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	c0018	3423	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP152_chr15_48732938_48816069	1/1	c0001	5133	211	55	36	77	13	28	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0002	5133	42	0	5	31	0	6	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0003	5133	27	0	4	23	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0004	5133	16	1	1	14	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0005	5133	4	4	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0006	5133	3	3	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0007	5133	2	0	0	2	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0008	5133	2	0	0	0	0	2	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0009	5133	2	2	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0010	5133	2	0	0	2	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0011	5133	2	2	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0012	5133	2	2	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0013	5133	1	0	1	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0014	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0015	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0016	5133	1	0	0	0	1	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0017	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0018	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0019	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0020	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0021	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0022	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0023	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0024	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0025	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0026	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0027	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0028	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0029	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0030	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0031	5133	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0032	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0033	5133	1	0	1	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0034	5133	1	0	0	0	0	1	copy fasta	CEP152	chr15	48732938	48816069