Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTN2_chr1_236681499_236769631	0/0	c0031	2685	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0032	2685	1	0	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	c0033	2685	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN3_chr11_66541903_66568334	0/1	c0001	2706	156	50	21	65	9	10	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0002	2706	138	12	26	82	1	17	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0003	2706	42	9	2	30	1	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0004	2706	20	3	7	1	1	8	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0005	2706	7	7	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0006	2706	4	0	0	4	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0007	2706	3	3	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0008	2706	3	0	1	2	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0009	2706	2	2	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	1/0	c0010	2706	2	0	1	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0011	2706	2	0	0	2	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0012	2706	2	1	1	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0013	2706	2	0	2	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0014	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0015	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0016	2706	1	0	0	0	0	1	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0017	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0018	2706	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0019	2706	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0020	2706	1	0	0	0	0	1	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0021	2706	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0022	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0023	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0024	2706	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0025	2706	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0026	2706	1	0	1	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0027	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0028	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0029	2706	1	0	0	0	0	1	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	c0030	2706	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN4_chr19_38642649_38736589	1/0	c0001	2736	144	38	23	63	4	15	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/1	c0002	2736	94	16	16	46	4	11	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0003	2736	22	5	11	0	2	4	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0004	2736	21	3	5	4	3	6	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0005	2736	10	0	8	0	2	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0006	2736	3	0	2	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0007	2736	3	3	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0008	2736	3	3	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0009	2736	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0010	2736	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0011	2736	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0012	2736	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0013	2736	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0014	2736	1	0	0	0	0	1	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0015	2736	1	0	0	0	0	1	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0016	2736	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0017	2736	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589