JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP152_chr15_48732938_48816069	0/0	c0035	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0036	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0037	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0038	5133	1	0	0	0	0	1	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	c0039	5133	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP162_chr6_84119250_84232643	1/1	c0001	4212	135	30	38	39	5	21	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0002	4212	14	9	3	0	1	1	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0003	4254	12	1	7	0	0	4	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0004	4212	11	9	2	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0005	4212	9	9	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0006	4212	6	1	0	2	0	3	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0007	4212	5	5	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0008	4212	4	4	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0009	4212	3	2	1	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0010	4212	2	2	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0011	4212	2	2	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0012	4212	2	2	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0013	4212	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0014	4212	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0015	4212	1	0	0	1	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0016	4212	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0017	4212	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0018	4254	1	0	0	0	0	1	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0019	4212	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0020	4212	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	c0021	4254	1	0	1	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP164_chr11_117322854_117418266	0/0	c0001	4383	101	21	11	59	4	6	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0002	4383	93	12	21	47	4	9	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0003	4383	61	18	14	18	3	8	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0004	4383	39	12	7	17	0	3	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	1/1	c0005	4383	35	2	6	15	1	9	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0006	4383	6	6	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0007	4383	6	0	0	5	0	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0008	4383	6	0	2	0	0	4	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0009	4383	4	1	0	0	2	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0010	4383	4	0	3	0	1	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0011	4383	3	3	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0012	4383	2	0	0	0	0	2	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0013	4383	2	0	0	2	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0014	4383	2	2	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0015	4383	2	0	1	0	1	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0016	4383	1	0	0	0	0	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0017	4383	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0018	4383	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0019	4383	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0020	4383	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0021	4383	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0022	4383	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0023	4383	1	0	0	0	0	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	c0024	4383	1	0	0	1	0	0	copy fasta	CEP164	chr11	117322854	117418266