JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP170B_chr14_104860268_104901747	0/0	c0086	4665	1	0	0	1	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	c0087	4665	1	0	1	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	c0088	4665	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	c0089	4659	1	0	1	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170_chr1_243119428_243260281	0/0	c0001	4755	225	51	49	89	10	26	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0002	4755	24	3	9	9	2	1	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0003	4755	12	12	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0004	4755	10	10	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0005	4755	7	1	6	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/1	c0006	4755	4	0	1	0	0	2	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0007	4755	3	3	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0008	4755	2	2	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0009	4755	2	2	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0010	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0011	4755	1	0	0	0	0	1	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0012	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0013	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0014	4755	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0015	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0016	4755	1	0	1	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0017	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0018	4755	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0019	4755	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0020	4755	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0021	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0022	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	c0023	4755	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP192_chr18_12986362_13130036	0/0	c0001	7614	69	10	16	31	5	7	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0002	7614	68	5	6	47	1	9	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	1/1	c0003	7614	63	3	17	23	4	14	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0004	7614	50	0	2	44	0	4	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0005	7614	47	21	4	15	2	5	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0006	7614	12	10	0	0	1	1	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0007	7611	10	9	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0008	7614	8	8	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0009	7614	7	1	0	6	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0010	7614	7	0	7	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0011	7614	5	3	2	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0012	7614	3	3	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0013	7614	3	3	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0014	7614	3	0	0	3	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0015	7614	2	2	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0016	7614	2	2	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0017	7614	2	1	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0018	7614	2	0	0	0	2	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0019	7614	2	2	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0020	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0021	7614	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0022	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0023	7614	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036