JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP192_chr18_12986362_13130036	0/0	c0024	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0025	7614	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0026	7614	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0027	7614	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0028	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0029	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0030	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0031	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0032	7614	1	0	0	0	1	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0033	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0034	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0035	7614	1	0	0	0	0	1	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0036	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0037	7614	1	0	0	0	0	1	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0038	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0039	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0040	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0041	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0042	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0043	7614	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0044	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0045	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	c0046	7614	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP19_chr3_196701277_196717250	1/1	c0001	492	429	98	81	184	18	46	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	c0002	492	2	0	0	2	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	c0003	492	1	0	1	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP20_chr16_15860719_15893603	0/1	c0001	525	363	83	71	154	13	41	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	c0002	528	67	5	9	49	3	1	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	c0003	525	2	0	0	0	0	2	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	c0004	525	1	0	0	1	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP250_chr20_35450598_35524280	0/1	c0001	7329	138	33	32	40	8	24	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0002	7329	41	14	7	16	1	3	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0003	7329	26	3	2	13	0	8	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0004	7329	7	7	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0005	7329	6	4	2	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0006	7329	6	6	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0007	7329	5	5	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0008	7329	3	0	0	3	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0009	7329	3	0	0	3	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0010	7329	3	3	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0011	7329	2	2	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0012	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0013	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0014	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0015	7329	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0016	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0017	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	1/0	c0018	7329	1	0	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0019	7329	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0020	7329	1	0	0	0	1	0	copy fasta	CEP250	chr20	35450598	35524280