JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP250_chr20_35450598_35524280	0/0	c0021	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0022	7329	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0023	7329	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0024	7329	1	0	0	0	0	1	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0025	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0026	7329	1	0	1	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0027	7329	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0028	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0029	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0030	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	c0031	7329	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP290_chr12_88044016_88147088	0/1	c0001	7440	106	26	23	34	4	18	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0002	7440	31	0	6	24	0	1	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	1/0	c0003	7440	20	17	2	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0004	7440	16	16	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0005	7440	13	10	3	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0006	7440	11	2	2	7	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0007	7440	6	1	0	2	0	3	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0008	7440	4	1	1	0	0	2	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0009	7440	4	0	2	0	0	2	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0010	7440	3	3	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0011	7440	3	3	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0012	7440	2	0	0	0	0	2	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0013	7440	2	0	0	2	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0014	7440	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0015	7440	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0016	7440	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0017	7440	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0018	7440	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0019	7440	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0020	7440	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0021	7440	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0022	7440	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0023	7440	1	0	1	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0024	7440	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0025	7440	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	c0026	7440	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP295NL_chr17_78885579_78908201	1/1	c0001	1866	332	43	64	175	14	34	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0002	1866	19	17	2	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0003	1866	13	1	5	0	2	5	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0004	1866	9	0	0	8	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0005	1866	8	8	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0006	1866	8	8	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0007	1866	6	0	0	6	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0008	1866	4	4	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0009	1866	3	3	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0010	1866	3	0	3	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0011	1866	3	3	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0012	1866	3	2	1	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0013	1866	3	3	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201