JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP295NL_chr17_78885579_78908201	0/0	c0014	1866	2	0	0	0	0	2	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0015	1866	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0016	1866	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0017	1866	1	0	0	1	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0018	1866	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0019	1866	1	0	0	1	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0020	1866	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0021	1866	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0022	1866	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0023	1866	1	0	1	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0024	1866	1	0	0	1	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0025	1866	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0026	1866	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0027	1866	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	c0028	1866	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295_chr11_93656682_93735358	0/0	c0001	7806	187	23	33	98	9	24	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0002	7806	39	0	2	36	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	1/0	c0003	7806	34	22	6	4	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0004	7806	12	0	0	12	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0005	7806	12	2	6	0	3	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0006	7806	9	8	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0007	7806	4	4	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0008	7806	4	4	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0009	7806	3	3	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0010	7806	3	3	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0011	7806	2	1	0	0	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/1	c0012	7806	2	0	0	0	1	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0013	7806	2	0	0	0	0	2	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0014	7806	2	1	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0015	7806	2	0	0	2	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0016	7806	2	0	0	2	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0017	7806	2	1	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0018	7806	2	2	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0019	7806	2	2	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0020	7806	2	0	0	1	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0021	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0022	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0023	7806	1	0	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0024	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0025	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0026	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0027	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0028	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0029	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0030	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0031	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0032	7806	1	0	0	0	1	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0033	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0034	7806	1	0	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0035	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358