JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP295_chr11_93656682_93735358	0/0	c0036	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0037	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0038	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0039	7850	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0040	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0041	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0042	7806	1	0	0	0	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0043	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0044	7784	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0045	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0046	7806	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	c0047	7806	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP350_chr1_179949810_180119875	0/1	c0001	9354	85	14	19	39	4	8	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	1/0	c0002	9354	46	29	11	4	0	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0003	9354	41	2	1	32	1	5	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0004	9354	16	10	1	0	2	3	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0005	9354	10	3	1	3	0	3	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0006	9354	6	5	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0007	9354	5	5	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0008	9354	5	0	3	0	1	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0009	9354	3	3	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0010	9354	3	3	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0011	9354	2	0	0	2	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0012	9354	2	2	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0013	9354	2	0	0	2	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0014	9354	2	0	0	2	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0015	9354	2	2	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0016	9354	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0017	9354	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0018	9354	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0019	9354	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0020	9354	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0021	9354	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0022	9354	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0023	9354	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0024	9354	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0025	9354	1	0	0	0	0	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0026	9354	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0027	9354	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0028	9354	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0029	9354	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0030	9354	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0031	9354	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0032	9354	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	c0033	9354	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP41_chr7_130388771_130446016	1/1	c0001	1122	342	82	69	137	14	38	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	c0002	1122	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	c0003	1122	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	c0004	1122	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	c0005	1122	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016