JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP43_chr6_166994397_167057718	1/0	c0001	1200	334	63	59	162	16	33	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	c0002	1200	21	2	1	15	0	3	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	c0003	1200	8	7	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	c0004	1200	6	5	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	c0005	1200	5	5	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/1	c0006	1200	1	0	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	c0007	1200	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP44_chr4_174278911_174325328	0/0	c0001	1173	132	14	21	85	2	10	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0002	1173	124	40	30	27	8	19	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	1/1	c0003	1173	120	28	24	54	3	9	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0004	1173	4	3	1	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0005	1173	3	0	0	3	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0006	1173	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0007	1173	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0008	1173	1	0	0	0	1	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0009	1173	1	0	0	1	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	c0010	1173	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP55_chr10_93491612_93534092	0/1	c0001	1395	143	19	34	61	6	22	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0002	1395	69	9	3	50	2	5	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0003	1395	49	11	12	24	1	1	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0004	1395	24	3	0	18	0	3	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0005	1395	17	0	8	8	0	1	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0006	1395	17	3	6	3	1	4	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0007	1395	13	12	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0008	1395	12	12	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	1/0	c0009	1395	7	5	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0010	1395	6	0	1	0	2	3	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0011	1395	6	6	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0012	1395	4	4	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0013	1395	3	3	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0014	1395	2	2	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0015	1395	2	0	2	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0016	1395	2	2	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0017	1395	2	1	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0018	1395	2	0	2	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0019	1395	1	0	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0020	1395	1	0	0	1	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0021	1395	1	1	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0022	1395	1	0	0	0	0	1	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0023	1395	1	1	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	c0024	1395	1	0	0	1	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP57L1_chr6_109090507_109179418	1/1	c0001	1383	174	67	26	55	3	21	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0002	1383	37	11	9	7	3	7	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0003	1383	5	1	3	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0004	1383	4	4	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0005	1383	4	4	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0006	1383	1	0	0	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0007	1383	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0008	1383	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	c0009	1383	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418