JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP57_chr11_95785498_95837693	1/0	c0001	1503	242	77	38	85	11	30	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/1	c0002	1503	87	10	13	52	5	6	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0003	1503	3	1	2	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0004	1503	1	0	0	1	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0005	1503	1	0	1	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0006	1503	1	1	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0007	1503	1	0	1	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0008	1503	1	0	0	1	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0009	1503	1	0	1	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0010	1503	1	1	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	c0011	1503	1	0	0	1	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP63_chr3_134481057_134570031	1/0	c0001	2112	167	68	22	50	6	20	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/1	c0002	2112	82	4	18	49	4	6	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0003	2112	59	12	12	22	2	11	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0004	2112	3	0	0	3	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0005	2112	2	0	0	2	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0006	2112	2	1	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0007	2112	1	0	0	0	1	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0008	2112	1	0	0	1	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0009	2112	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0010	2112	1	0	0	0	1	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0011	2112	1	0	0	1	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0012	2112	1	0	0	0	0	1	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	c0013	2112	1	0	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP68_chr2_65051416_65092004	1/0	c0001	2274	174	39	31	84	4	15	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0002	2274	49	0	6	41	0	2	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/1	c0003	2274	41	0	6	23	3	8	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0004	2274	22	21	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0005	2271	18	7	5	0	2	4	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0006	2274	7	3	1	1	0	2	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0007	2274	5	0	4	0	1	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0008	2271	5	5	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0009	2274	4	2	0	0	0	2	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0010	2274	4	0	0	4	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0011	2274	3	3	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0012	2274	2	2	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0013	2274	2	0	0	2	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0014	2274	2	0	2	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0015	2274	2	2	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0016	2274	2	2	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0017	2274	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0018	2274	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0019	2274	1	0	0	0	0	1	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0020	2274	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0021	2274	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0022	2274	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0023	2274	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0024	2274	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0025	2274	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0026	2274	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004