Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTN4_chr19_38642649_38736589	0/0	c0018	2736	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0019	2736	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	c0020	2736	1	0	0	0	1	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTR10_chr14_58195149_58240636	1/1	c0001	1254	312	79	64	111	16	40	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	c0002	1254	7	0	0	5	0	2	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	c0003	1254	1	0	0	1	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	c0004	1254	1	0	0	1	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	c0005	1254	1	1	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR1A_chr10_102474229_102507712	1/1	c0001	1131	384	90	72	170	10	40	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	c0002	1131	3	0	0	3	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	c0003	1131	1	0	0	1	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1B_chr2_97650939_97669044	1/1	c0001	1131	173	27	26	89	2	27	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0002	1131	158	29	34	74	11	10	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0003	1131	50	39	8	1	1	1	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0004	1131	9	0	5	0	4	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0005	1131	2	0	0	2	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0006	1131	1	0	1	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0007	1131	1	1	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0008	1131	1	0	0	0	0	1	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0009	1131	1	0	0	0	0	1	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0010	1131	1	1	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	c0011	1131	1	1	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR2_chr2_65222831_65276253	1/1	c0001	1185	319	91	64	110	16	36	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	c0002	1185	5	5	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	c0003	1185	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	c0004	1185	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR3B_chr7_152754752_152860378	1/1	c0001	1257	303	85	55	119	10	32	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	c0002	1257	2	2	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	c0003	1257	1	1	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	c0004	1257	1	1	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	c0005	1257	1	1	0	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	c0006	1257	1	0	0	1	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	c0007	1257	1	0	1	0	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3C_chr7_150242212_150328545	1/1	c0001	633	173	32	38	70	9	22	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0002	633	93	50	3	35	1	4	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0003	633	8	1	1	2	0	4	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0004	633	7	0	0	7	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0005	633	3	3	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0006	633	3	0	0	3	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0007	633	2	0	0	0	0	2	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0008	633	1	0	0	1	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0009	633	1	0	0	1	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0010	633	1	1	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0011	633	1	1	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	c0012	633	1	0	0	1	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3_chr2_113885089_113967596	1/1	c0001	1257	387	86	62	188	11	38	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	c0002	1257	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	c0003	1257	1	0	0	0	1	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	c0004	1257	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR5_chr20_38743460_38777520	1/1	c0001	1824	173	24	32	87	10	18	copy fasta	ACTR5	chr20	38743460	38777520