JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP83_chr12_94302698_94464867	0/0	c0005	2106	7	0	3	0	2	2	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0006	2106	3	3	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0007	2106	3	3	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0008	2106	2	2	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0009	2106	1	0	1	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0010	2106	1	0	0	1	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0011	2106	1	0	0	1	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0012	2106	1	1	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP85L_chr6_118455772_118656591	1/0	c0001	2418	115	19	26	53	6	10	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/1	c0002	2418	97	33	15	30	2	16	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0003	2418	42	0	24	10	4	4	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0004	2418	14	10	2	0	0	2	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0005	2418	11	8	1	2	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0006	2418	9	9	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0007	2418	8	8	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0008	2418	1	0	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0009	2418	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0010	2418	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0011	2418	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0012	2418	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	c0013	2418	1	0	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85_chr1_26229200_26283808	1/1	c0001	2286	223	55	40	95	6	25	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0002	2286	72	4	16	43	4	5	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0003	2286	21	7	4	1	6	3	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0004	2286	5	5	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0005	2286	3	3	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0006	2286	3	3	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0007	2286	2	2	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0008	2286	2	0	0	0	0	2	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0009	2286	2	0	2	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0010	2286	1	1	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0011	2286	1	0	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0012	2286	1	0	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0013	2286	1	0	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0014	2286	1	0	0	1	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0015	2286	1	1	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0016	2286	1	1	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0017	2286	1	0	0	0	0	1	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	c0018	2286	1	0	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP89_chr19_32870925_32976958	0/0	c0001	2352	89	18	9	51	3	8	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0002	2352	80	16	10	50	1	3	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0003	2352	64	15	16	20	3	10	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0004	2352	45	1	10	29	1	4	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0005	2352	27	4	10	0	4	9	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0006	2352	22	3	2	9	1	7	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0007	2352	20	1	2	13	1	3	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0008	2352	12	12	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0009	2352	4	4	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0010	2352	4	2	1	0	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0011	2352	3	3	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958