JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP89_chr19_32870925_32976958	0/0	c0012	2352	2	1	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	1/0	c0013	2352	2	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0014	2352	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0015	2352	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0016	2352	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0017	2352	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/1	c0018	2352	1	0	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0019	2352	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0020	2372	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0021	2352	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0022	2352	1	0	0	0	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0023	2352	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0024	2352	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	c0025	2352	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP95_chr17_64501977_64542946	1/1	c0001	2466	237	81	44	72	7	31	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0002	2466	2	2	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0003	2466	1	1	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0004	2466	1	0	0	1	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0005	2466	1	1	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0006	2466	1	0	0	0	0	1	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0007	2466	1	1	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0008	2466	1	0	0	0	1	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0009	2466	1	0	0	1	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0010	2466	1	0	0	0	0	1	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	c0011	2466	1	0	0	0	0	1	copy fasta	CEP95	chr17	64501977	64542946
CEP97_chr3_101719614_101775562	0/1	c0001	2598	298	69	47	149	6	26	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	1/0	c0002	2598	34	13	10	2	4	4	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0003	2598	3	2	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0004	2598	2	0	0	2	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0005	2598	2	0	0	2	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0006	2598	1	0	0	0	1	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0007	2598	1	0	0	0	0	1	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0008	2598	1	0	0	0	1	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0009	2598	1	0	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0010	2598	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0011	2598	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0012	2598	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0013	2598	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0014	2598	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0015	2598	1	0	0	0	0	1	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0016	2598	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0017	2598	1	0	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	c0018	2598	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEPT1_chr1_111135223_111190104	1/1	c0001	1251	341	93	53	143	9	41	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	c0002	1251	66	1	18	39	3	5	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	c0003	1251	2	0	0	0	0	2	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	c0004	1251	1	0	1	0	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CER1_chr9_14714724_14727733	1/0	c0001	804	310	18	59	187	10	35	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0002	804	87	52	12	17	4	2	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/1	c0003	804	30	10	10	2	1	6	copy fasta	CER1	chr9	14714724	14727733