JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CER1_chr9_14714724_14727733	0/0	c0004	804	16	7	6	0	1	2	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0005	804	7	7	0	0	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0006	804	3	0	0	3	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0007	804	2	1	1	0	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0008	804	1	0	0	1	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0009	804	1	0	0	1	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0010	757	1	0	0	1	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0011	804	1	1	0	0	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	c0012	804	1	0	0	0	0	1	copy fasta	CER1	chr9	14714724	14727733
CERCAM_chr9_128415857_128442347	1/1	c0001	1788	212	31	51	91	11	26	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0002	1788	117	12	16	71	3	15	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0003	1788	18	14	4	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0004	1788	9	9	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0005	1788	7	7	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0006	1788	5	0	0	5	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0007	1788	5	5	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0008	1788	3	3	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0009	1788	3	3	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0010	1788	3	0	0	3	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0011	1788	2	2	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0012	1788	2	2	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0013	1788	2	2	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0014	1788	2	0	0	0	0	2	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0015	1788	1	0	0	1	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0016	1788	1	1	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0017	1788	1	1	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0018	1788	1	0	0	0	0	1	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0019	1788	1	1	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0020	1788	1	0	0	1	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0021	1788	1	0	0	1	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0022	1788	1	0	0	1	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0023	1788	1	1	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	c0024	1788	1	0	1	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERKL_chr2_181531672_181662105	0/0	c0001	1599	118	12	17	66	6	17	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/1	c0002	1599	91	39	19	20	4	8	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0003	1599	38	7	7	21	2	1	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0004	1599	34	0	8	25	0	1	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0005	1599	2	2	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	1/0	c0006	1599	2	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0007	1599	2	2	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0008	1599	2	2	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0009	1599	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0010	1599	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0011	1599	1	0	0	0	0	1	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0012	1599	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0013	1599	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0014	1599	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0015	1599	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0016	1599	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	c0017	1599	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105