JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CERK_chr22_46679410_46743252	1/1	c0001	1614	188	34	32	81	12	27	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0002	1614	49	1	16	28	1	3	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0003	1614	13	4	5	3	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0004	1614	12	2	7	0	0	3	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0005	1614	12	12	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0006	1614	8	1	4	0	1	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0007	1614	6	6	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0008	1614	4	1	1	0	1	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0009	1614	4	4	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0010	1614	3	2	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0011	1614	3	3	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0012	1614	3	3	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0013	1614	3	3	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0014	1614	2	0	0	0	0	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0015	1614	2	0	0	2	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0016	1614	2	1	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0017	1614	2	2	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0018	1614	2	1	0	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0019	1614	2	0	1	0	1	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0020	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0021	1614	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0022	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0023	1614	1	0	0	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0024	1614	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0025	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0026	1614	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0027	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0028	1614	1	0	0	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0029	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0030	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0031	1614	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0032	1614	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0033	1614	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0034	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0035	1614	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0036	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0037	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0038	1614	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	c0039	1614	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERS1_chr19_18863545_18901158	1/0	c0001	1053	154	20	18	92	3	20	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/1	c0002	1053	131	26	28	53	9	14	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	c0003	1053	89	47	12	19	1	10	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	c0004	1053	2	0	2	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	c0005	1053	1	0	0	1	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	c0006	1053	1	0	0	1	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	c0007	1053	1	0	0	0	1	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	c0008	1053	1	1	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS2_chr1_150960186_150979835	1/1	c0001	1143	354	84	67	158	14	29	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	c0002	1143	20	0	7	6	2	5	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	c0003	1143	7	7	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835