JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CERS2_chr1_150960186_150979835	0/0	c0004	1143	1	1	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS3_chr15_100395395_100533950	0/1	c0001	1152	261	47	41	135	6	31	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0002	1152	43	27	8	1	2	5	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0003	1152	38	10	13	12	1	2	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0004	1152	5	0	2	2	0	1	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0005	1152	3	0	2	0	1	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0006	1152	3	0	0	3	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0007	1152	2	0	1	0	0	1	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0008	1152	2	2	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	1/0	c0009	1152	1	0	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0010	1152	1	0	0	1	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0011	1152	1	0	1	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0012	1152	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	c0013	1152	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS4_chr19_8204370_8267421	0/0	c0001	1185	168	30	27	77	7	27	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0002	1185	72	3	24	32	7	6	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0003	1185	54	23	3	26	0	2	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	1/1	c0004	1185	37	9	2	18	1	5	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0005	1185	20	3	8	4	0	5	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0006	1185	20	0	7	13	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0007	1185	15	11	1	0	1	2	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0008	1185	9	5	2	2	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0009	1185	5	3	0	2	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0010	1185	2	2	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0011	1185	2	2	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0012	1185	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0013	1185	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0014	1185	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0015	1185	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0016	1185	1	0	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0017	1185	1	0	1	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0018	1185	1	0	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0019	1185	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0020	1185	1	0	1	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0021	1185	1	0	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0022	1185	1	0	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0023	1185	1	0	0	0	0	1	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0024	1185	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	c0025	1185	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS5_chr12_50124289_50172369	0/0	c0001	1179	160	55	17	72	3	13	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/1	c0002	1179	93	24	22	28	3	15	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	1/0	c0003	1179	61	5	15	20	8	12	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	c0004	1179	6	6	0	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS6_chr2_168451272_168780134	1/1	c0001	1155	165	79	18	52	2	12	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	c0002	1155	6	6	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	c0003	1155	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	c0004	1155	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	c0005	1155	1	0	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	c0006	1155	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	c0007	1155	1	0	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134