JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CERT1_chr5_75372775_75516629	1/1	c0001	1875	205	71	37	76	6	13	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	c0002	1875	126	17	16	70	2	21	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	c0003	1875	1	0	0	1	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	c0004	1875	1	1	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	c0005	1875	1	0	1	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	c0006	1875	1	1	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	c0007	1875	1	0	0	1	0	0	copy fasta	CERT1	chr5	75372775	75516629
CES1_chr16_55797851_55838096	1/0	c0001	1707	59	8	11	26	3	10	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0002	1707	14	1	1	10	0	2	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0003	1707	5	0	0	5	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0004	1707	3	2	0	0	1	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0005	1707	2	2	0	0	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0006	1707	1	0	0	0	0	1	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0007	1707	1	0	0	1	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0008	1707	1	1	0	0	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	c0009	1707	1	0	0	0	0	1	copy fasta	CES1	chr16	55797851	55838096
CES2_chr16_66930516_66950096	1/1	c0001	1680	344	80	50	170	10	32	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0002	1680	11	11	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0003	1680	11	4	1	0	0	6	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0004	1680	2	2	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0005	1680	1	0	1	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0006	1680	1	0	1	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0007	1680	1	1	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0008	1680	1	0	0	0	0	1	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0009	1680	1	0	1	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	c0010	1680	1	0	0	0	0	1	copy fasta	CES2	chr16	66930516	66950096
CES3_chr16_66956266_66980149	1/1	c0001	1716	263	69	40	112	14	26	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0002	1716	20	0	7	12	0	1	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0003	1716	11	4	1	0	0	6	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0004	1716	8	8	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0005	1716	6	5	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0006	1716	4	0	4	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0007	1716	2	0	0	2	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0008	1716	2	0	2	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0009	1716	2	2	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0010	1716	2	2	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0011	1716	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0012	1716	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0013	1716	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0014	1716	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0015	1716	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0016	1716	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0017	1716	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0018	1716	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0019	1716	1	0	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	c0020	1716	1	0	0	0	0	1	copy fasta	CES3	chr16	66956266	66980149
CES4A_chr16_66983589_67015417	1/1	c0001	1686	175	16	42	80	9	26	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0002	1686	76	33	8	30	0	5	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0003	1686	35	34	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0004	1686	11	4	1	0	1	5	copy fasta	CES4A	chr16	66983589	67015417