JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CES4A_chr16_66983589_67015417	0/0	c0005	1686	3	3	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0006	1686	2	2	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0007	1686	1	0	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0008	1686	1	0	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0009	1686	1	1	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	c0010	1686	1	1	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES5A_chr16_55841154_55880373	0/0	c0001	1728	94	2	34	42	7	9	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0002	1728	61	7	10	30	4	10	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0003	1728	37	10	1	21	1	4	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0004	1728	36	5	9	15	2	5	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0005	1728	30	4	6	13	1	6	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0006	1728	29	2	5	21	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0007	1728	17	0	5	11	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/1	c0008	1728	15	6	0	5	0	3	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0009	1728	9	5	0	4	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0010	1728	9	7	0	0	2	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0011	1728	8	1	1	5	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0012	1728	7	0	0	7	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0013	1728	6	4	1	0	1	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0014	1728	4	3	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0015	1728	4	0	0	4	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0016	1728	3	0	0	3	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0017	1728	3	2	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0018	1728	3	0	0	3	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0019	1728	3	0	0	0	0	3	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0020	1728	3	3	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0021	1728	3	3	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0022	1728	2	0	0	2	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0023	1728	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0024	1728	2	0	0	2	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0025	1728	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0026	1728	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0027	1728	2	0	0	2	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0028	1728	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0029	1728	2	0	1	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0030	1728	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0031	1728	2	0	0	2	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0032	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0033	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0034	1728	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0035	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0036	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0037	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0038	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0039	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0040	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0041	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0042	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0043	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0044	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373