JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CES5A_chr16_55841154_55880373	0/0	c0045	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0046	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0047	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0048	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0049	1728	1	0	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0050	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0051	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0052	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0053	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0054	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0055	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0056	1728	1	0	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0057	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0058	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0059	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0060	1728	1	0	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0061	1728	1	0	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0062	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0063	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0064	1728	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0065	1728	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0066	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0067	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0068	1728	1	0	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0069	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0070	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0071	1728	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0072	1728	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0073	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0074	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0075	1728	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	c0076	1728	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CETN1_chr18_575380_587114	1/1	c0001	519	333	80	60	137	13	41	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	c0002	519	81	16	12	47	3	3	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	c0003	519	4	0	1	3	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	c0004	519	2	1	1	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	c0005	519	1	1	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	c0006	519	1	0	0	1	0	0	copy fasta	CETN1	chr18	575380	587114
CETN2_chrX_152821994_152835757	1/1	c0001	519	320	76	52	149	9	32	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	c0002	516	1	0	0	1	0	0	copy fasta	CETN2	chrX	152821994	152835757
CETN3_chr5_90387257_90414756	1/0	c0001	504	285	88	58	100	11	27	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/1	c0002	504	63	6	10	32	3	11	copy fasta	CETN3	chr5	90387257	90414756
CETP_chr16_56956950_56988845	0/1	c0001	1482	207	29	42	93	13	29	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	1/0	c0002	1482	168	29	25	101	2	10	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0003	1482	17	12	1	0	1	3	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0004	1482	12	0	11	0	0	1	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0005	1482	9	0	0	7	0	2	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0006	1482	6	6	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0007	1482	6	6	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0008	1482	5	0	0	5	0	0	copy fasta	CETP	chr16	56956950	56988845